Comments (8)
Hi bofster,
Thanks for your feedback. Your suggestion make sense to me. It is not a tough job, but I am tied up with other tasks at this stage. I will probably add the this feature to MEGAHIT in one to two weeks.
Dinghua
from megahit.
Thanks ... that would be really great.
On Sun, Jan 18, 2015 at 12:46 AM, Dinghua Li [email protected]
wrote:
Hi bofster,
Thanks for your feedback. Your suggestion make sense to me. It is not a
tough job, but I am tied up with other tasks at this stage. I will probably
add the this feature to MEGAHIT in one to two weeks.
Dinghuaโ
Reply to this email directly or view it on GitHub
#12 (comment).
from megahit.
bofster,
Please check out the commit 0d6e306 on the branch dev-continue-mode
. To continue a interrupted run, please run MEGAHIT with option --continue -o OUTPUT_DIR
. I've done several tests on a small dataset with the continue mode. See whether it works for you. I look forward to your feedback.
Cheers,
Dinghua
from megahit.
It looks like it is working for me on small datasets too. I will test it on larger sets. This is a great feature!
Would it be possible to be able to specify --continue on the first run also? Maybe disregard the --continue flag if it is a first run? If it were allowed on first run, the user would not have to change the command line at all for resubmission after failure.
from megahit.
Please try this commit e248ce0
Using --continue
on the first run will raise a warning message but switch to the normal mode after then.
from megahit.
It looks good to me. -continue mode works on initial run and restarting failures. Thanks!
I did notice it prints 8 messages.(I was using 8 threads)
Cannot find ./megahit_out/opts.txt
Please check whether the output directory is correctly set by "-o"
Now switching to normal mode.
Cannot find ./megahit_out/opts.txt
Please check whether the output directory is correctly set by "-o"
Now switching to normal mode.
Cannot find ./megahit_out/opts.txt
Please check whether the output directory is correctly set by "-o"
Now switching to normal mode.
Cannot find ./megahit_out/opts.txt
....
from megahit.
Fixed. b97ae36
And fix a bug when using both --continue
and --input-cmd
. 3f4c93b
The branch of continue mode has been merged to master branch.
from megahit.
I downloaded and tried MEGAHIT v0.2.0 master branch. Great release!
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