Comments (2)
Vivianstats
commented on July 29, 2024
Hi Aiden,
I would suggest to prepare 4 bam files for celltype A and 4 bam files for celltype B, and input them as bam_c1 and bam_c2.
When you have 4 samples, this may not make a big difference; however, when you have more samples and paired test is desired, such input is required by MAAPER to produce the right results.
Best,
Vivian
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AidenSb
commented on July 29, 2024
Hi Vivian,
Thanks for the explanation, Indeed I have way more than 4 samples! one experiment has up to 20 samples ( control) and the other has like 10(treatment). So just to make sure if I understood correctly do you suggest to merge these to one big bam file? or proceed with multiple bams per condition?
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