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virtualplants's Projects

aml icon aml

AML: The AMAPmod language for plant architecture analysis

cellcomplex icon cellcomplex

OpenAlea library implementing data structures and algorithms for the representation and manipulation of cellular complexes.

cgal_meshing icon cgal_meshing

Generate coarse meshes of cell tissue from 3D segmented images using the CGAL library.

dag icon dag

Formalisation of DAG usage for plant modelling

draco_stem icon draco_stem

OpenAlea library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images : Dual Reconstruction by Adjacency Complex Optimization (DRACO) and SAM Tissue Enhanced Mesh (STEM)

flowerdemo icon flowerdemo

Demo to manipulate flowers architecture and genes.

lpy icon lpy

An open source python version of the Lindenmayer Systems.

mtg icon mtg

The Mutliscale Tree Graph datastructure

openalea icon openalea

Temporary repository used to merge openalea/core openalea/oalab openalea/vplt. Once merged, move it to openalea/openalea

timagetk icon timagetk

3D and 2D Image processing algorithms in Python for tissues

tissue_analysis icon tissue_analysis

An OpenAlea library providing image analysis tools to extract quantitative information from 3D segmented tissue images

tissuelab icon tissuelab

A multi-platform, plugin-based platform dedicated to the interactive visualization and complex processing of plant tissues

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