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ampliseq

16S rRNA amplicon sequencing analysis workflow using QIIME2

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bioinfo

canine_gistic2

Canine CanFam3.1 GISTIC2 copy number analysis. For debugging GISTIC2 .mat file, please contact developers at https://www.genepattern.org/modules/docs/GISTIC_2.0) or https://groups.google.com/a/broadinstitute.org/g/gistic-forum

common-workflow-language

Repository for the CWL standards. Use https://www.biostars.org/t/cwl/ for support 😊

cri_rnaseq_2018

CRI RNAseq 2018

cs_books

Books in Computer Science

deganalysis

DEG Analysis, including DESeq, DESeq2, edgeR, and limma

digital-cv

gatk

Official code repository for GATK versions 4 and up

gdc-fastq-splitter

CLI for splitting a fastq that has multiple readgroups

leetcode_python

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-core-westest

A nf-core pipeline for SNV and CNV analysis of WES data for matched Tumor/Normal samples

production-data-science

Production Data Science: a workflow for collaborative data science aimed at production

treelib

An efficient implementation of tree data structure in python 2/3.