viktormiok Goto Github PK

agrp-neurons_profiling

RNA-seq profiling of the AgRP-Cre mice under standard chow, high fat high sugar and DREADD diet.

ase_mbased

Executable R script for ASE with MBASED

astrocytesheterogenityarc

Analysis of proteomics, bulk and single cell RNA-seq data to investigate reorganisation of astrocytic molecular identity

biofig

R package for visualization of omics data

coni

Correlation Guided Network Integration

csppa

Machine learning analysis & visualisation of cellular spatial point patterns

cspparshiny

The R Shiny App for machine learning analysis and visualization of cellular spatial point patterns under hypercaloric diet shifts.

dnamethyl-mirna_oscc

Gene regulatory networks characterization of methylation profiles from OSCC and their interplay with microRNAs.

ggsea

Generalized Gene Set Enrichment Analysis

metformin-rat_diet-gender

metformin-Rat_diet-gender

multiomics4fastingtherapies

Multi OMICS analysis for comparisons of fasting therapies

phd-thesis

Latex scripts to compile my PhD thesis

phd-thesissm

PhD thesis supplementary materials

python_ml_dataanalysis

Machine learning methods to process data for features, train the models, assess the performance, and tune parameters for better performance.

ragt2ridges

Ridge Estimation of Vector Auto-Regressive (VAR) Processes

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scrnaseq_adipocyte_immunecells

In depth characterisation of Immune cells in different adipocyte cells from young and old mice using scRNAseq data

scrnaseq_adipocytesubtyping

Python pipelines for analysis of adipocyte scRNA-seq data

snrnaseq_ribotagrnaseq-oxytocin

Coupling of oxytocin and cholecystokinin pathways in the hypothalamus is required for gut-to-brain homeostatic feeding control

temposeq_carcinochemmcf-7

Cellular​ ​signatures​ characterisation ​after​ ​carcinogenic​ ​chemical​ ​exposure​ ​in​ ​mammalian​ ​tissue.

tigar

Temporal Integrative Genomics Analysis in R

tigarcycle

An R package for utilities to guide in-depth detection of circadian signals from omics time series data

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