Comments (1)
Maarten-vd-Sande
commented on August 17, 2024
Hi Alberto,
Great you find seq2science useful! Thanks for the extensive bug report, yes it is a bug!
I updated the idr recipe on bioconda to require numpy<1.20, which should mean that this problem is fixed for everyone (not just seq2science). On top of that I've added a change to the seq2science-idr environment that it has to have a numpy version smaller than 1.20, which will be there in the next release.
I'll close this issue when that's released 😄
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Related Issues (20)
- BUG: download_fastq report error HOT 4
- BUG: [config.yaml error] HOT 15
- Combining STAR and Salmon HOT 5
- STAR 2-pass alignment HOT 1
- Q: [Comparative RNA-Seq analysis] HOT 2
- Q: [DEG analysis contrast] HOT 1
- BUG: chipseeker is broken (again)
- FR: [DEG by Salmon]
- FR: python/scanpy interoperability for single cell?
- FR: single cell auto detection if droplet or cell based barcodes?
- BUG: qc_scRNA rules dont use params, so rerunning doesn't work
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- Issue with Chip-seq pipeline: jobid: 27: one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode! HOT 8
- Q: Stuck with initialisation of a workflow (atac-seq) HOT 13
- BUG: Problem with the Initiation HOT 6
- FR: Use temporary directories for sra and temporary fastq files HOT 14
- BUG: Incorrect SRA files (RNA-seq) HOT 1
- BUG: [scATAC-seq successful run but bam file and snap object are missing cell barcodes] HOT 6
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