uwb-linux Goto Github PK
Name: University of Washington Bothell/STEM Linux Lab
Type: Organization
Bio: University of Washington Bothell campus Linux Lab
Location: Bothell WA
Name: University of Washington Bothell/STEM Linux Lab
Type: Organization
Bio: University of Washington Bothell campus Linux Lab
Location: Bothell WA
SV detection from paired end reads mapping
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R. More information at
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
reference free variant assembly
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
C library for high-throughput sequencing data formats
LoFreq Star: Sensitive variant calling from sequencing data
NEAT read simulation tools
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
prinseq-lite-0.20.4
The official repository for ROOT: analyzing, storing and visualizing big data, scientifically
Tools (written in C using htslib) for manipulating next-generation sequencing data
A 3'-end adapter contaminant trimmer
Windowed Adaptive Trimming for fastq files using quality
simuG: a general-purpose genome simulator
slurm repository. Originally from https://github.com/SchedMD/slurm
A flexible framework for rapid genome analysis and interpretation
Variant Calling and Postfiltering
Variant calling and somatic mutation/CNV detection for next-generation sequencing data
0.1.13
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.