utooley Goto Github PK

analysis-nda17

Collection of scripts to analyze ABCD release data

arun_fc_metrics_motion

cbig

citation_bias_ext

cleanbib

Probabilistically assign gender proportions of first/last authors pairs in bibliography entries

cogtrain

Kable Lab Work

connectir

Advanced functional connectivity functions and scripts including ones for connectome-wide association studies.

denoiser

Nuisance removal tool for fMRI data

ds000114

Demo derived dataset based on OpenfMRI ds000114

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

lab3

Python Bootcamp 3rd Lecture

models_in_r

CASE Workshops

motion-fc-metrics

Code to perform QC-FC analysis on human connectome project (HCP) data with different functional connectivity (FC) measures

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

net_learn_adults

netlearn_kids_analysis

netlearn_task_v1

Network learning task in PsychoPy

nistats.github.io

Nistats webpage

niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

openfmri

This repository aggregates Gablab scripts that operate in BIDS.

parse_vnav_motion

A python script for parsing motion info in vNav DICOM series

pennbbl.github.io

Information and tutorials on how to go from DICOMS to dataframes

pinheirochagas.github.io

Website

qa

redoc

[NOTE: Project in suspended animation for now] Reversible Reproducible Documents

repo2data-caching-s3

rs_scripts

scripts related to seed-based resting state functional connectivity analysis

rsfmri_envi_networks

Code accompanying Tooley et al. (2020), Associations between Neighborhood SES & Functional Brain Development. https://doi.org/10.1093/cercor/bhz066

spatial_topography_cubic

specification-curves

Tutorial on Specification Curve Analysis for dev brown bag, May 2019