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airr-seq

Adaptive immune repertoire sequencing related code

biocontainers

Docker containers of Computational Biology of Aging Group

codon-distance

crawl4celllines

cross-species-linear-models

Cross-species linear models analysis of gene expression and pathways enrichment association with mammalian maximum lifespan (MLS) and other species traits.

gdrive-migration

Code for migrating contents of google drives.

grafana-monitoring

Monitor servers and docker

heavy-light-dependence

Investigates heavy and light chain structural similarities across structural antibodies datasets.

help2022-ukr-scrape

htgaa2022

human-protein-atlas-analysis

immune_repertoires_db

immuneml

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

interspecies_homology_converter

Script to get species' genes homology correspondence

macs_model

Biophysical modelling of the MACS procedure

meth2expr

nrichgenes

Performs gene enrichment analysis, for personal use. A wrapper for gseapy: https://pypi.org/project/gseapy/

peptide_prot_csv2fasta_converter

Script for personal use to convert peptide sequences - protein id tabular files to .fasta

pooled-screening-simulation

Simulation of pooled screening efficiency.

pyuno

Python UNO game for strategy analysis

rango

Tango with python project

rna-seq

bioinformatics pipelines

rosalind_bioinformatics_problems

saab_plus_dockerized

Docker container for the SAAB+ pipeline: https://github.com/oxpig/saab_plus

scagecom

Analysis of the Dysregulation of Intercellular Communication with Age from scRNA-seq

scihub-mozilla-add-on

Mozilla add on for sci-hub.

shiny-golem-toy

src-gastricadk-md-thesis

Materials for graduation thesis from medical school.

substitution_decision_errors

synergy-prediction