Comments (1)
Hi Elena,
Did you try creating the (empty) directory you want to use before running RepeatMasker
?
From the notes:
You can specify an output directory like -dir my_RM_output_dir, but you must create the directory first, RepeatMasker will not do it for you. If you donβt create this directory before running RepeatMasker, it will be ignored and it will create a directory similar to before...
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