Kmerstream sometimes fails when estimating the kmers to use about shovill HOT 4 CLOSED

There are upstream bugs in Kmerstream:

• pmelsted/KmerStream#11
• pmelsted/KmerStream#12

I am waiting for @pmelsted to respond.

However I realise now his python code depends on scipy which is not something I want to depend on.

from shovill.

Thanks for looking into this Torsten. A couple of options which don't use
scipy are kmergenie and bbtools. Perhaps @accopeland or @aclum can offer
some suggestions too.

On Wednesday, 12 October 2016, Torsten Seemann [email protected]
wrote:

There are upstream bugs in Kmerstream:

• pmelsted/KmerStream#11
  pmelsted/KmerStream#11
• pmelsted/KmerStream#12
  pmelsted/KmerStream#12

I am waiting for @pmelsted https://github.com/pmelsted to respond.

However I realise now his python code depends on scipy which is not
something I want to depend on.

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from shovill.

I've ditched KmerStream due to lack of response.

from shovill.

Thanks @tseemann

from shovill.