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bpod_gen2

Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

datajoint-tutorials

Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

emmynoether_template

Template for DFG Emmy Noether Proposals

freelymovingephys

Preprocessing and analysis for electrophysiology experiments in freely moving mice.

immoscraper

Immoscout24.de scraper and data analytics

joy

Generates a joyplot movie.

lgn_analysis

LGN electrophysiological analysis scripts; SCRIPTS AND FUNCTIONS ARE INITIATED BY Analysis_mini_ramp; EXCEL SHEET IS NEEDED

matlab

MATLAB Tools - Various useful functions we've put together for convenience

mini2p1_aux---bonsai

neural_decoding

A python package that includes many methods for decoding neural activity

point_grey_bonsai_multi_camera_acquisition

Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.

psc-detection-dist

Distribution of code implementing the Bayesian PSC detection algorithm described in Merel et al, J. Neuro. Meths., 2016.

rspace-client-python

Python SDK and examples for the RSpace API

scanimagetools

MATLAB tools for running imaging experiments with ScanImage

sci-viz-demo

A demonstration of SciViz's latest features included as part of the pipeline visualization framework.

stimfit-helpers

suite2p

cell detection in calcium imaging recordings