Trinity RNA-Seq de novo transcriptome assembly see the Trinity wiki
We encourage you to contribute to Trinity! Please check out the Contributing for the guidelines.
Type: Organization
Trinity RNA-Seq de novo transcriptome assembly see the Trinity wiki
We encourage you to contribute to Trinity! Please check out the Contributing for the guidelines.
normalizes coverage depth by position-specific read sampling in a bam file to give a target max depth
workshop in Berlin, mid-June 2017
week-long Trinity workshop in Berlin, June 2018
workshop in Bern, Switzerland in Oct 2016
Workshop in Bern, Switzerland in June, 2018
Workshop content for Bioinformatics for Cancer Genomics workshop 2019
Butterfly codebase
Chrysalis codebase
basic rna-seq tutorial, leveraging Trinity, StringTie, HISAT2, and IGV
rna-seq materials for the CSHL programming for biology series 2017
CSHL Prog for Bio 2018, trinity rnaseq section
CSHL Prog for Bio course 2019, rna-seq section
rnaseq workshop w/ EMBO in Sept 2016, based on the Krumlov 2016 materials
Running the Trinity protocol via a Galaxy web interface.
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
The wiki repo, with pull request enabled, for the rnaseq_tutorial
Inchworm codebase
milestones and momentos
Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2016
Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2017
Trinity RNA-Seq workshop in Krumlov 2018
Trinity workshop in Krumlov, Jan 2019
Trinity rnaseq workshop in Cesky Krumlov, Czech Republic, Jan 2020
Krumlov Trinity Workshop, May 2022
The first edition of the abridged version of the workshop
makes a mini-genome, shrinks introns, useful for developing small test sets and small data sets for workshops
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Open source projects and samples from Microsoft.
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Data-Driven Documents codes.
China tencent open source team.