Comments (10)
@DimEvil Do we plan to correct in the original concatenated.tsv
or the concatenated-gbif-match.tsv
? Choose what is the most convenient.
from alien-species-checklist.
I would propose to adapt the concatenated.tsv
to keep the workflow the easiest: concatenated.tsv
-> run script species-Gbif-API -> concatenated-gbif-match.tsv
from alien-species-checklist.
ok, i ll change that to concatenated.tsv
from alien-species-checklist.
We've changed our mind to simplify the workflow. The GBIF columns will be added or overwritten to the source file, which is still called concatenated.tsv
from alien-species-checklist.
@timadriaens @OscarDore, here's a list with 96 fuzzy matches in the dataset: https://github.com/LifeWatchINBO/alien-species-checklist/blob/master/data/fuzzy-matches.tsv
- For those records that are interpreted correctly by GBIF, do nothing
- For those records that are NOT interpreted correctly by GBIF, list them here
from alien-species-checklist.
I have to update the fuzzy match file, based on the new backbone taxonomy
from alien-species-checklist.
Who will take on this task? The file has been updated.
from alien-species-checklist.
I ll give it a try :)
from alien-species-checklist.
The corrected fuzzy match should be reintegrated in the concatenated.tsv
from alien-species-checklist.
Imported in concatenated at ca04720. The fuzzy match list was removed in 6b5b3fb, but can still be accessed at https://github.com/inbo/alien-species-checklist/blob/d6911b04e1c0ab8c3609e1148438c8167fee6047/data/fuzzy-matches.tsv
from alien-species-checklist.
Related Issues (20)
- standardization of terms HOT 4
- Should we include "to be determined by experts" and "unknown" in the vocabs HOT 5
- Merge controlled values in concatenated data HOT 2
- Invasive Pathways and InvasiveDistribution DwC extensions in sandbox + vocabulary on Pathways HOT 3
- Invasive species not in concatenated HOT 14
- Create chart for pathway counts HOT 15
- Rerun GBIF matching HOT 3
- Can we consider RINSE out of scope? HOT 3
- Restructure repo to cookiecutter HOT 1
- Verify synonyms HOT 3
- Solve multiple equal matches HOT 1
- Aggregated checklist HOT 2
- Clean up utilities HOT 2
- Move shortlist, gbif_name_match, patchfile, verified synonyms to this repo HOT 3
- Include t0 shortlist in aggregated checklist HOT 1
- Oscar News HOT 1
- check EU baseline distribution of IAS of Union concern in EASIN HOT 1
- Subspecies definition of Trachemys scripta Schoepff, 1792 HOT 6
- Add Crassula helmsi to T0 + update euConcernStatus for 12 species HOT 5
- ID's in the manual HOT 1
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from alien-species-checklist.