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peterdesmet avatar peterdesmet commented on August 23, 2024

@DimEvil Do we plan to correct in the original concatenated.tsv or the concatenated-gbif-match.tsv? Choose what is the most convenient.

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stijnvanhoey avatar stijnvanhoey commented on August 23, 2024

I would propose to adapt the concatenated.tsv to keep the workflow the easiest: concatenated.tsv -> run script species-Gbif-API -> concatenated-gbif-match.tsv

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DimEvil avatar DimEvil commented on August 23, 2024

ok, i ll change that to concatenated.tsv

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peterdesmet avatar peterdesmet commented on August 23, 2024

We've changed our mind to simplify the workflow. The GBIF columns will be added or overwritten to the source file, which is still called concatenated.tsv

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peterdesmet avatar peterdesmet commented on August 23, 2024

@timadriaens @OscarDore, here's a list with 96 fuzzy matches in the dataset: https://github.com/LifeWatchINBO/alien-species-checklist/blob/master/data/fuzzy-matches.tsv

  • For those records that are interpreted correctly by GBIF, do nothing
  • For those records that are NOT interpreted correctly by GBIF, list them here

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peterdesmet avatar peterdesmet commented on August 23, 2024

I have to update the fuzzy match file, based on the new backbone taxonomy

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peterdesmet avatar peterdesmet commented on August 23, 2024

Who will take on this task? The file has been updated.

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DimEvil avatar DimEvil commented on August 23, 2024

I ll give it a try :)

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DimEvil avatar DimEvil commented on August 23, 2024

The corrected fuzzy match should be reintegrated in the concatenated.tsv

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peterdesmet avatar peterdesmet commented on August 23, 2024

Imported in concatenated at ca04720. The fuzzy match list was removed in 6b5b3fb, but can still be accessed at https://github.com/inbo/alien-species-checklist/blob/d6911b04e1c0ab8c3609e1148438c8167fee6047/data/fuzzy-matches.tsv

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