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Treangen Lab's Projects

komb icon komb

KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.

lemur icon lemur

Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

methphaser icon methphaser

MethPhaser: methylation-based haplotype phasing of human genomes

olivar icon olivar

Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing

rhea icon rhea

Recognizing HGT Events in Assemblies

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