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Name: TRΛNS-GIRL.C0DΞS

Type: User

Bio: Former Bioinformatician & Scientist, Gamer, Coder, shameless fan of all things nerdy.

Location: Milky Way

Blog: https://linktr.ee/sabrinajward

Welcome to my GitHub Page

About me

She/Her, They/Them

Career

Academia
- PhD in Evolutionary Genomics.
  - The role genetic exchange and gene flow play in the adaptation of organisms to dynamic environments or situations such as "evolutionary arms-races".
- Bioinformatician working on a wide range of problems and projects:
  - Population genomics of fungi using HiFi read data to construct de-novo genomes.
  - Development of a hybrid genome assembler framework.
  - Assembling complex polyploid genomes.
  - Assembling pangenomes.
Industry
- Software and Infrastructure developer for Actuarial and Financial departments for a well-known UK GI Company.

Highlighted work

Software projects

BioJulia - Software infrastructure for Genomics & Bioinformatics
HybridCheck - R package for scripting scans for recombination regions in sequences.

TRΛNS-GIRL.C0DΞS's Projects

literate.jl

Simple package for literate programming in Julia

materialize

Materialize, a CSS Framework based on Material Design

mctrd

Command line tool for add/extract files from .scl and .trd images

minigraph

Proof-of-concept seq-to-graph mapper and graph generator

mjc

A python implementation of the Minimum Jump Cost dissimilarity algorithm.

msprime

A reimplementation of Hudson's classical ms simulator for modern data sets.

nclist.jl

Currently experimental replacement for BioJulia/IntervalTrees.jl

nes.jl

A NES emulator and collection of environments in Julia for RL

networks.jl

Additional graph flexibility for LightGraphs

obsidian-zola

A no-brainer solution to turning your Obsidian PKM into a Zola site.

openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

Symmetric matrix as a list of the values in its upper or lower triangular part. Useful for representing pairwise measures or comparisons when the used metric or distance satisfies the symmetry condition and for adjacency matrices of undirected graphs.