Comments (3)
I would think so, I can't think of a time when you wouldn't want that behavior.
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I agree that T and U should be considered identical also during dereplication. I will change this behaviour in the next version of VSEARCH. USEARCH 7.0.1090 treats them as different though. (Could be added to the Deliberate changes section in the manual.)
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Fixed in version 1.0.1.
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Related Issues (20)
- Consequences of using vsearch on NovaSeq data HOT 4
- Fix warnings reported by Lintian HOT 2
- Obtaining the expected error for each read HOT 4
- Question about the query file of -usearch_global command when creating OTU tables HOT 6
- Convert Qiime2 database (2 files) into fasta database (1 file) for taxonomic assignment in vsearch HOT 2
- --weak_id not working HOT 8
- Problem building HOT 1
- Can't run static binary HOT 3
- is there a major vote fraction parameter of a vsearch clustered consensus sequence? HOT 5
- usearch_global command eats my sample IDs HOT 3
- USEARCH wants to go open-source? HOT 3
- Adapt for RISC-V HOT 2
- centroid sequence length after clustering is different from input sequences' length which are all equal to 200n HOT 2
- unexpected behaviour - v 2.28 sintax chooses first sequence when not classifiable HOT 4
- --fastq_ascii and --fastq_qmax must be no more than 126 HOT 1
- Segfault with derep_id on both strands HOT 2
- --fastx_uniques: still reachable memory under certain conditions (minor issue) HOT 1
- Unexpected behavior when clustering short sequences HOT 4
- interpretation of --maxaccepts vsearch HOT 3
- Very slow processing sintax vsearch/2.28.1 HOT 3
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