Topic: topological-data-analysis Goto Github

Some thing interesting about topological-data-analysis

👇 Here are 240 public repositories matching this topic...

aidos-lab / pytorch-topological

topological-data-analysis,A topological machine learning framework based on PyTorch

Organization: aidos-lab

Home Page: https://pytorch-topological.readthedocs.io/

deep-learning pytorch topological-data-analysis topological-machine-learning

aidos-lab / tardis

topological-data-analysis,TARDIS: Topological Algorithms for Robust DIscovery of Singularities

Organization: aidos-lab

Home Page: https://tardis-tda.readthedocs.io/en/latest/

anomaly-detection topological-data-analysis topological-machine-learning singularity-detection icml-2023

anirudhsom / pi-net

topological-data-analysis,Python code to directly compute persistence images (PIs) from data (time-series or images) using deep learning.

User: anirudhsom

deep-learning computational-topology persistence-image persistence-images topological-data-analysis

borgwardtlab / p-wl

topological-data-analysis,A Persistent Weisfeiler–Lehman Procedure for Graph Classification

Organization: borgwardtlab

weisfeiler-lehman topological-data-analysis graph-classification persistent-homology graph-kernels machine-learning

borgwardtlab / topological-autoencoders

topological-data-analysis,Code for the paper "Topological Autoencoders" by Michael Moor, Max Horn, Bastian Rieck, and Karsten Borgwardt.

Organization: borgwardtlab

topological-data-analysis autoencoder tda persistent-homology

braindynamicslab / dyneusr

topological-data-analysis,Dynamical Neuroimaging Spatiotemporal Representations (DyNeuSR)

Organization: braindynamicslab

Home Page: https://braindynamicslab.github.io/dyneusr

brain-dynamics brain-networks mapper-algorithm neuroimaging topological-data-analysis visualization

c-hofer / torchph

topological-data-analysis,The essence of my research, distilled for reusability. Enjoy 🥃!

User: c-hofer

Home Page: https://c-hofer.github.io/torchph/

pytorch deep-learning persistent-homology topological-data-analysis gpu differentiable-persistent-homology

cakcora / coinworks

topological-data-analysis,

User: cakcora

blockchain graph bitcoin topological-data-analysis betti-numbers

camaralab / sctda

topological-data-analysis,An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data

Organization: camaralab

single-cell-rna-seq topological-data-analysis

dillondaudert / umap.jl

topological-data-analysis,Uniform Manifold Approximation and Projection (UMAP) implementation in Julia

User: dillondaudert

umap julia dimensionality-reduction visualization machine-learning topological-data-analysis

ebanflo42 / persistence

topological-data-analysis,A topological data analysis library for Haskell

User: ebanflo42

topological-data-analysis topology library haskell

erdogant / findpeaks

topological-data-analysis,The detection of peaks and valleys in a 1d-vector or 2d-array (image)

User: erdogant

Home Page: https://erdogant.github.io/findpeaks

peak-detection mesh 3d-reconstruction topological-data-analysis topology mask peak-analysis denoising-images speckle-noise sar

fatemehtarashi / awesome-tda

topological-data-analysis,A curated list of topological data analysis (TDA) resources and links.

User: fatemehtarashi

topological-data-analysis tda awesome awesome-list machine-learning

giotto-ai / giotto-ph

topological-data-analysis,High performance implementation of Vietoris-Rips persistence.

Organization: giotto-ai

Home Page: https://giotto-ai.github.io/giotto-ph/

machine-learning computational-topology topological-data-analysis topology

giotto-ai / giotto-tda

topological-data-analysis,A high-performance topological machine learning toolbox in Python

Organization: giotto-ai

Home Page: https://giotto-ai.github.io/gtda-docs

topological-machine-learning topological-data-analysis machine-learning scikit-learn tda mapper topology computational-topology

gpz-bioinfo / tmap

topological-data-analysis,topological data analysis of population-scale microbiomes

Organization: gpz-bioinfo

Home Page: https://tmap.readthedocs.org

topological-data-analysis microbiome-analysis

gudhi / gudhi-devel

topological-data-analysis,The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.

Organization: gudhi

Home Page: https://gudhi.inria.fr/

topology tda topological-data-analysis python persistent-homology cpp17

hanssmail / quantq

topological-data-analysis,The repository for the Machine Learning and Big Data with kdb+/q book by Novotny et al.

User: hanssmail

kdb kdb-q machine-learning mathematical-functions bioinformatics algorithm deep-neural-networks quantum-computing topological-data-analysis

hyungkwonko / umato

topological-data-analysis,Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)

User: hyungkwonko

umato dimensionality-reduction visualization topological-data-analysis umap

ksanjeevan / mapper-tda

topological-data-analysis,Mapper implementation (Topological Data Analysis) in Python

User: ksanjeevan

topological-data-analysis

lait-cvlab / toppr

topological-data-analysis,NeurIPS 2023 - TopP&R: Robust Support Estimation Approach for Evaluating Fidelity and Diversity in Generative Models Official Code

Organization: lait-cvlab

Home Page: https://lait-cvlab.github.io/TopPR/

evaluation-metrics generative-model topological-data-analysis

lmcinnes / umap

topological-data-analysis,Uniform Manifold Approximation and Projection

User: lmcinnes

umap dimensionality-reduction visualization machine-learning topological-data-analysis

lordgrilo / aml-days-tda-tutorial

topological-data-analysis,

User: lordgrilo

data-science python3 tda topological-data-analysis tutorial

luisscoccola / persistable

topological-data-analysis,density-based clustering for exploratory data analysis based on multi-parameter persistence

User: luisscoccola

cluster-analysis clustering clustering-algorithm machine-learning machine-learning-algorithms topological-data-analysis unsupervised-learning

marrlab / shapr_torch

topological-data-analysis,SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"

Organization: marrlab

Home Page: https://shapr.topology.rocks

cubical-complexes deep-learning image-reconstruction persistent-homology pytorch segmentation topological-data-analysis topological-machine-learning

mtsch / ripserer.jl

topological-data-analysis,Flexible and efficient persistent homology computation.

User: mtsch

Home Page: https://mtsch.github.io/Ripserer.jl/dev/

persistent-homology topological-data-analysis homology cohomology tda ripser julia topology

multinetlab-amsterdam / network_tda_tutorial

topological-data-analysis,This repository is dedicated for the tutorial on network and topological neuroscience.

Organization: multinetlab-amsterdam

Home Page: https://lindadouw.com/

tda graph-theory topological-data-analysis fmri neuroscience neuroimaging

ognis1205 / spark-tda

topological-data-analysis,SparkTDA is a package for Apache Spark providing Topological Data Analysis Functionalities.

User: ognis1205

topological-data-analysis tda spark apache-spark machine-learning ml mllib

openantz / antz

topological-data-analysis,ANTz immersive 3D data visualization engine

Organization: openantz

Home Page: https://openantz.com

data-visualization data-analysis data-science openxr mixed-reality-toolkit visualization-tools visual-effects video-processing hyperglyphs topological-data-analysis

pierrebaudot / infotopopy

topological-data-analysis,computes most of information functions (joint entropy, conditional, mutual information, total correlation information distance) and deep information networks

User: pierrebaudot

topological-data-analysis information-theory statistical-structures complex-systems statistical-mechanics deep-learning mutual-information entropy conditional-probability causal-inference

pseudomanifold / aleph

topological-data-analysis,A library for exploring persistent homology

User: pseudomanifold

Home Page: https://pseudomanifold.github.io/Aleph/

persistent-homology topological-data-analysis c-plus-plus-11 persistence machine-learning

pyt-team / topomodelx

topological-data-analysis,Topological Deep Learning

Organization: pyt-team

cell-complex-networks cell-complex-neural-networks cxn graph-neural-networks higher-order-models higher-order-networks topological-data-analysis topological-deep-learning cw-networks simplicial-neural-networks

pyt-team / toponetx

topological-data-analysis,Computing on Topological Domains

Organization: pyt-team

cell-complexes cw-complex-networks higher-order-networks simplicial-complex combinatorial-complex hypernetx topological-deep-learning topological-learning cw-complex topological-data-analysis

ripser / ripser

topological-data-analysis,Ripser: efficient computation of Vietoris–Rips persistence barcodes

Organization: ripser

Home Page: http://ripser.org

computational-topology persistent-homology topological-data-analysis

rivettda / rivet

topological-data-analysis,RIVET is a tool for Topological Data Analysis, in particular two-parameter persistent homology.

Organization: rivettda

algebraic-topology data-science data-visualization persistent-homology topological-data-analysis

rodrgo / openph

topological-data-analysis,Parallel reduction of boundary matrices for Persistent Homology with CUDA

User: rodrgo

persistent-homology topological-data-analysis parallel-computing cuda gpu-computing numerical-computation

rrrlw / tdastats

topological-data-analysis,R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.

User: rrrlw

Home Page: https://rrrlw.github.io/TDAstats

topological-data-analysis homology-calculations cran ripser ggplot2 pipeline r persistent-homology tda homology

scikit-tda / kepler-mapper

topological-data-analysis,Kepler Mapper: A flexible Python implementation of the Mapper algorithm.

Organization: scikit-tda

Home Page: https://kepler-mapper.scikit-tda.org

data-visualization mapper-algorithm topological-data-analysis tda python visualization kepler-mapper hacktoberfest

scikit-tda / pervect

topological-data-analysis,Vectorization of persistence diagrams and approximate Wasserstein distance

Organization: scikit-tda

persistent-homology python topological-data-analysis topology vectorizer wasserstein-metric

scikit-tda / ripser.py

topological-data-analysis,A Lean Persistent Homology Library for Python

Organization: scikit-tda

Home Page: http://ripser.scikit-tda.org

topological-data-analysis persistent-homology homology topology tda data-science ripser

scikit-tda / scikit-tda

topological-data-analysis,Topological Data Analysis for Python🐍

Organization: scikit-tda

Home Page: https://docs.scikit-tda.org

topological-data-analysis scikit-tda mapper topology tda homology tda-python tda-libraries

scikit-tda / tadasets

topological-data-analysis,Synthetic data sets apt for Topological Data Analysis

Organization: scikit-tda

Home Page: http://tadasets.scikit-tda.org

dataset topology topological-data-analysis tda

shervinazadi / topogenesis

topological-data-analysis,Python Package for Generative Systems and Sciences

User: shervinazadi

Home Page: https://topogenesis.readthedocs.io/?badge=latest

python generative topological-data-analysis topology

stefaniaebli / simplicial_neural_networks

topological-data-analysis,Simplicial neural networks (SNNs), a generalization of graph neural networks to data that live on a class of topological spaces called simplicial complexes.

User: stefaniaebli

Home Page: https://arxiv.org/abs/2010.03633

graph-neural-networks deep-learning laplacian convolutional-neural-networks topological-data-analysis geometric-deep-learning