Comments (1)
tomaroberts
commented on July 22, 2024
1
Hi @EnriqueFV, thanks for raising an issue.
Currently, the orientation of the DICOMs is hard-coded – see here. I haven't implemented a more general solution to this yet. If you are familiar enough with Python, you could edit that line in nii2dcm or create a new --dicom-type (see svr.py for an example) where you override the default ImageOrientationPatient value.
One other thing which may or may not be useful: within ITK-Snap, you can play with orientation by going to: Tools > Reorient Image ...
This brings up the following menu where you can set and swap between orientations:
However, to my knowledge, you can't use this to save a new DICOM dataset with an altered orientation.
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