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2022-machine-learning-specialization

annotsv

Annotation and Ranking of Structural Variation

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

berkeleytextbooks

Textbooks (EE)CS majors at Berkeley would find helpful

bgi_vs_illumina_benchmark

This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.

biofx_python

Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

book

bookdown-crc

A minimal example of using bookdown to write a book for Chapman & Hall/CRC

brass

Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.

broad-prod-wgs-germline-snps-indels

Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://github.com/gatk-workflows/five-dollar-genome-analysis-pipeline

chromhmm

cnvbench

Benchmarking of CNV calling tools

cnvkit

Copy number variant detection from targeted DNA sequencing

correlation

:link: Methods for Correlation Analysis

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

cpp-primer-plus-6th

《C++ Primer Plus 第6版（中文版）》原书代码、习题答案和个人笔记，仅供学习和交流。

cpp_tour

A tour of C++ constructs using Bazel build system

cs-video-courses

List of Computer Science courses with video lectures.

csci_570

USC :v: 2021 Spring CSCI 570 (Analysis of Algorithms) 算法分析 Score: :eight::five:

datasharing

The Leek group guide to data sharing

deconstructsigs

deconstructSigs

deeprc

DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

diffusion-probabilistic-models

Reference implementation for Deep Unsupervised Learning using Nonequilibrium Thermodynamics

diffusion_models

A series of tutorial notebooks on denoising diffusion probabilistic models in PyTorch

doc-annovar

Documentation for the ANNOVAR software

drivergenepathway

Identify Driver Genes and Driver Pathways in Cancer based on MutSigCV and Statistical methods

ds4bio_book

Files for the Data Science in Python for Biomedical Applications book

ds4ph-bme

A github repo for the Data Science in Public Health and Biomedical Engineering Course

ds4ph-fourth-term