Giter Club home page Giter Club logo

I'm a neurobiologist and microscopist by training, and I enjoy maintaining libraries in the general ecosystem of python image visualization and analysis.

  • I was a core developer of napari.
  • Many of the reusable patterns I developed there have been extracted into reusable libraries in the pyapp-kit organization which I continue to maintain.
  • I also maintain the pymmcore-plus organization, a set of packages for microscopy aquisition in pure-python/C++ environments.

In this github org, notable libraries include:

  • FPbase: source code for fpbase.org, the fluorescent protein database.
  • nd2: modern nd2 (Nikon NIS-elements) file reader with broad support
  • ome-types: Python classes for working with the OME datamodel (i.e. OME-XML metadata)
  • pycudadecon: Python wrapper for CUDA-accelerated 3D deconvolution for microscopy
  • pycudasirecon: CUDA-accelerated reconstruction for 3D-structured-illumination
  • cmap: Comprehensive colormap library, with only numpy dependency
  • PSFmodels: Scalar and vectorial models of the 3D microscope point spread function.
  • mrc: deltavision (.mrc/.dv) image file format reader/writer.

Talley Lambert's Projects

acquire-python icon acquire-python

Acquire: a multi-camera video streaming software focusing on microscopy

aicsimageio icon aicsimageio

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

app-model icon app-model

Generic application schema implemented in python.

beartype icon beartype

Unbearably fast O(1) runtime type-checking in pure Python.

bioformats_jar icon bioformats_jar

(deprecated) meta-package to import bioformats_jar from scyjava

cellier icon cellier

A multiscale cellular architecture visualization toolkit.

cellpose icon cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

cellpose-napari icon cellpose-napari

napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

chromatix icon chromatix

Differentiable wave optics library using JAX! Documentation can be found at https://chromatix.readthedocs.io

classlight icon classlight

simple webapp to get realtime feedback from student audience.

cmap icon cmap

Scientific colormaps for python, with only numpy dependency

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.