Comments (1)
The ambiguity group number simply links contacts representing different alternative sequence mappings, i.e. grouped contacts share the same group number. Hi-C data will often not have ambiguity information, as such sequence mappings are usually discarded. In this case the ambiguity groups can be set to sequential integers (i.e. number the rows), so you get a different value for each contact. For info, though the Aiden .hic format is not currently supported this may be added in the future.
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Related Issues (11)
- Getting contact map for individual chromosomes? HOT 1
- Getting genome wide contact map in .npy or related format?
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- nun for hybrid genome
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