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100-days-of-ml-code

100-Days-Of-ML-Code中文版

10x

190825a_bioinfo-papers

2016_fips_tutorials

Protein-coding Evolution and Detecting Natural Selection | Tutorials

3d-genome-gitbook

An ebook- introduction of Genome Interaction

ab10-assembly

B73Ab10 genome assembly methods

assemblathon2-analysis

collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

astral

Accurate Species TRee ALgorithm

atlas

ATLAS - Three commands to start analysing your metagenome data

auto-asm

snakemake long read assembly pipeline

awesome-atac-analysis

Links to ATAC-seq analysis tools

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bac-ngs-book

病原微生物高通量测序数据分析笔记

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bio_scripts

Practical, reusable scripts for bioinformatics

biocode

Bioinformatics code libraries and scripts

biograpy

Biological Graphic tool in Python

bioinformatics-tools

Awk, bash, python scripts for processing NGS data

blog_image

broomcorn-millet-genome-assembly

Chromosome conformation capture resolved near complete genome assembly of broomcorn millet

brownlab-workflow

Code used by us of the Brown lab at SIUC. Mostly for phylogenomics using UCEs.

brownlab-workflow-mcmctree

Tutorial for using MCMCTree as implemented by Brown Lab at SIUC. For divergence time estimation on UCE datasets, for dendrobatid frogs.

bwtool

A tool for bigWig files.

cafe_fig

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

card-expansion

A morphing card expansion effect enhanced by a low poly background animation, using SVG clipPath and Trianglify.

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

chip-seq-pipeline

chip-seq pipelines for the Renlab

circos-pipeline

circos pipeline

cld

A software for the multispecies design of CRISPR/Cas9 libraries

clusterprofshinygsea

A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries