tingtingshao Goto Github PK

abc-enhancer-gene-prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

alphafold

Open source code for AlphaFold.

alphafold-kul

Setup and run AlphaFold as a Singularity container

atac-seq

Analysis pipeline for ATAC-seq data

bds-files-bioinformatics-data-skills

Supplementary files for my book, "Bioinformatics Data Skills"

beamer

A LaTeX class for producing presentations and slides

cdhit-web-server

computing_for_bioinformatics

czifile

czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html

dataviz

A book covering the fundamentals of data visualization

dbms

principles of database managemnt

deeplearningpython

neuralnetworksanddeeplearning.com integrated scripts for Python 3.5.2 and Theano with CUDA support

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

docs

TensorFlow documentation

epiformer_li

The deep learning model and pre-trained model

gwas_usecases

hiddenmarkovmodel

Code for the Hidden Markov Model Tutorial Series

hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

introduction_to_ml_with_python

Notebooks and code for the book "Introduction to Machine Learning with Python"

iris

A Shiny web server for interactive visualization and analysis of RNA-seq data

java_assignment_2022

java_oop

kanakata

a simple kana (hiragana & katakana) quiz

kcni-school-lessons

A collection of code and lessons for the KCNI Summer School

lawgpt

🎉 Repo for LaWGPT, Chinese-Llama tuned with Chinese Legal knowledge. 基于中文法律知识的大语言模型

ldsc_li_cited

LD Score Regression (LDSC)

machine-learning-foundations-and-techniques

台大Coursera 机器学习基石 林轩田

macs_li_cited

MACS -- Model-based Analysis of ChIP-Seq