Reads k-mers from files and inserts them in a BloomFilter per file. Once every input file has been processed, Bloom Filters are aggregated to get a count of k-mer presence per colors. Outputs a CSV that can be used to generate a plot of k-mers abundances by color inside your data.

git clone   https://github.com/TimRouze/UpSet
cargo build

cargo r -r input_fof.txt

• -o or --output: Output file (Default = Out.csv)
• -t or --threads: number of threads (Default = 1)
• -m or --memory: Memory (in Gb) allocated to each Bloom Filters (1 BF per file + 2 ABF) (Default = 4Gb/BF)
• -h or --hashes: number of Hashes used in Bloom Filters (Default = 1)
• -M or --modimizer: Modimizer modulo value (Default = 1)
• -h or --help: Display help

Many tanks to Igor Martayan who helped me discovering programming in rust and allowed me to re-use lots of code from this repo: BRRR.