thorstenwagner Goto Github PK

basic-yolo-keras

Easy training on custom dataset. Various backends (MobileNet and SqueezeNet) supported. A YOLO demo to detect raccoon run entirely in brower is accessible at https://git.io/vF7vI (not on Windows).

bst-med-ude

BibTex Zitierstil (bst) für Doktorarbeiten an der Medizinischen Fakultät der Uni Duisburg Essen / BibTex citation style (bst) for PhD theses at the medical faculty of the university duisburg essen

cryo-em-bash-scripts

scripts to monitor cryo-em jobs

cryocare_mpido

MPI Dortmund edition of cryoCARE

cryodrgn

Neural networks for cryo-EM reconstruction

de-rse.github.io

Web repository

docker-deeppicker

docker-java8-maven

Sets up a container with oracle jdk8 and maven 3

docker-sphire

docker-yolo-keras

Docker for yolo-keras

edubit

edubit programme

edubit_k7_2

Ein MakeCode-Projekt

eman2

A scientific image processing software suite with a focus on CryoEM and CryoET

gooey

Turn (almost) any Python command line program into a full GUI application with one line

ij-blob

ImageJ library to detect and analyse connected components (blobs) in binary images

ij-ellipsesplit

ImageJ Plugin to split binary objects by ellipse fitting

ij-irregular-watershed

Watershed for irregular objects

ij-nanotrackj

NanoTrackJ is an ImageJ/Fiji plugin to characterize the size of nanoparticles by its diffusion trajectories.

ij-ndef-daemon

Daemon for the NanoDefine ParticleSizer for AutoTEM

ij-ndef-ext

Serveral extension or helper plugins for the nanodefine project

ij-nl-means

Non local means filter for ImageJ

ij-particlesizer

ImageJ plugin to derive number based size distributions based on recorded TEM images. A focus of the development was to provide different splitting methods to handle agglomerates and aggregates, robust handling of different noise levels and adaptability to non-standard images.

ij-r-plot

Small plugin to plot histograms and make basic fittings in ImageJ with R

ij-ridgedetection

Detect ridges / lines with imagej

ij-robust-split

Implementation of Kumar's et. al. "A rule-based approach for robust clump splitting" algorithm as ImageJ plugin

ij-shape-filter

Shape Filter Plugin for ImageJ

ij-shape-smoothing

Shape Smoothing Plugin for ImageJ

ij-trackmate-findmaxima

Find maxima detector for trackmate (module)

ij-trackmate-viewer

This little plugin loads an xml file exported by trackmate and display the tracks as overlay in an selected image

ij-trajectory-classifier

This plugin segments and classify diffusion trajectories