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Thomas van Gurp's Projects

biofast icon biofast

Benchmarking programming languages/implementations for common tasks in Bioinformatics

epigbs icon epigbs

Code for working with epiGBS data

epigbs2 icon epigbs2

This is the epiGBS2 snakemake pipeline as published in a preprint version.

fingpt icon fingpt

Data-Centric FinGPT. Open-source for open finance! Revolutionize 🔥 We'll soon release the trained model.

jbrowse icon jbrowse

A modern genome browser built with JavaScript and HTML5.

mlalgorithms icon mlalgorithms

Minimal and clean examples of machine learning algorithms

nanodisco icon nanodisco

nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.

nanoget icon nanoget

Functions to extract information from Oxford Nanopore sequencing data and alignments

nanoplot icon nanoplot

Plotting scripts for long read sequencing data

opentrons icon opentrons

Python API for writing protocols and running them on Opentrons robots

otgw-firmware icon otgw-firmware

A ESP8266 devkit firmware for the Nodoshop version of the Opentherm Gateway (OTGW)

ragtag icon ragtag

Tools for fast and flexible genome assembly scaffolding and improvement

spamfilter icon spamfilter

Machine learning for filtering out spam in the ENRON spam dataset

tennis-betting-ml icon tennis-betting-ml

Machine Learning model(specifically log-regression with stochastic gradient descent) for tennis matches prediction. Achieves accuracy of 66% on approx. 125000 matches

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