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biodocker

docker images for bioinformatics

clustermq

R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH

cocalc-docker

Docker setup for running CoCalc as downloadable software on your own computer

coursera-deep-learning

Practicals and tutorials of the Deep Learning specialization in Coursera

cyvcf2

cython + htslib == fast VCF and BCF processing

darkmatter

Machine Learning for TE annotation

diversity-determinants-recombination-landscapes-flowering-plants

Diversity an determinants of recombination landscapes in flowering plants

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

docker-aevol

Aevol in a Docker

docker-biohazard

A simple docker for the Biohazard bioinformatic tool

docker-faststructure

FastStructure

docker-ldhat

docker-libbam

Bam Tools

docker-pyrho

docker-r-popgen

A container including R and packages for population genetics analyses

docker-relernn

dotfiles-vsbuffalo

My dotfiles, with simple install script.

easymareymap

Yet Another Marey Map package

evince-academic

Fork of evince - New features and ergonomy for my own Academic use

evolsv

gatk_snp_calling_snakemake

GATK SNP calling using Snakemake

genindtoolbox

Some tools to export genind object (adegenet R package) into other formats (e.g. STRUCTURE input files, GENEPOP format).

genomics_general

General tools for genomic analyses.

gffutils

GFF and GTF file manipulation and interconversion

gwscan_2pop

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

hugo-deploy-gh-pages

📦 A GitHub Action to build and deploy a Hugo site to GitHub Pages

intro2popgenomics

Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts

landrec-lifehistory-ms

ldhat-snakemake-pipeline