Comments (3)
This doesn't seem to be the Exomiser YAML format? But sure, let's do that. If you like, please make a PR or send me the current preferred YAML format as an example!
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I'm trying to design the format as we speak! I meant just export the phenopacket in yaml format rather than export a complete exomiser analysis script. The above is a phenopacket-schema Family message which is needed in Exomiser as well as the singleton Phenopacket.
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@julesjacobsen I do not understand how the YAML script would fit in to the current Exomiser? It would be trivial to write an export function. Is all you need something that would implement
String yaml = new YAMLMapper().writeValueAsString(jsonNode);
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Related Issues (11)
- Cannot export, will not accept age string HOT 2
- hp.obo path is not saved HOT 2
- Evidence code HOT 10
- Days and Months missing HOT 4
- Approved terms should not contain duplicates HOT 4
- Running PhenopacketGenerator HOT 1
- Always override equals() and hashCode() in value-type classes (toString() is always nice too) HOT 4
- HtsFile URI
- HPO text-mining analysis terms API HOT 2
- 1.0.0-RC3 HOT 2
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