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brapi

Breeder's API implementation for TERRA-REF

canopy_height

plant height extractor science functions

computing-pipeline

Pipeline to Extract Plant Phenotypes from Reference Data

data-paper

data-publication

Just the content going to Dryad; see also terraref/data-paper for data descriptor

documentation

TERRAref documentation

drone-pipeline

Generalizing the TERRA REF pipelines for processing data from UAV's

extractors-3dscanner

Scripts and code relevant to the 3D height scanner.

extractors-environmental

Scripts and code relevant to the CO2 and environmental logger sensors, as well as Maricopa lightning/weather/irrigation data.

extractors-hyperspectral

Scripts and code relevant to the SWIR and VNIR cameras.

extractors-lemnatec-indoor

Scripts and code relevant to the PlantCV extractor. This is being split into a separate smaller repository for easier issue tracking and ongoing maintenance.

extractors-metadata

Scripts and code for generally applicable metadata extraction, e.g. extracting geospatial footprints from multiple sensors' metadata.

extractors-multispectral

Scripts and code relevant to the FLIR, PSII, NDVI, PRI and active reflectance (Crop Circle) sensors.

extractors-stereo-rgb

Scripts and code relevant to the 8MP RGB stereo 3D cameras.

flir_ir

extractor function convert flir to geotiff

icasa

ICASA vocabulary

kubeadm-terraform

Terraform plan that uses data-8's kubeadm bootstrap for Kubernetes on Openstack

laser3d

ply file to plot level las file science function package

lemnatec-fixed-metadata

XML files used to generate fixed metadata values for LemnaTec field scanner

quality-metrics

Repo for general QA/QC tools and extractors.

reference-data

Coordination of Data Products and Standards for TERRA reference data

scanner_3d

useful science functions in 3d scanner

search-api

flask api for advanced search interface

search-frontend

frontend for advanced search interface

sensor-metadata

Device and sensor fixed metadata

service-products

A REST server that provide helps locate file products.

stereo_rgb

the new science functions in Stereo-RGB extractor

terraref.github.io

[Deprecated] Original website content for the TERRA-REF reference phenotyping platform

terrautils

Python library for TERRA-REF specific modules and methods, e.g. those shared by multiple extractors.

toolserver-dockerfiles

TERRA-REF Dockerfiles for Clowder toolserver