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Khaled Abdel Maksoud's Projects

analysis_scripts icon analysis_scripts

Repo of simple to complex analysis scripts for analysing metadynamics/enhanced sampling simulations

crypticswish icon crypticswish

Scripts that are helpful to setup SWISH simulations (documentation under development, use with caution)

md_misc icon md_misc

Miscellaneous scripts and templates for simple one-system MD/MC engines in Python and C++

mdanalysis icon mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics simulations.

sarscov2_metad icon sarscov2_metad

PLUMED-NEST archive files for the study "Dyad Orientation-Dependent Regulation of SARS-CoV-2 Protease: Towards Informed Structure-Based Drug Discovery"

tmcs-coding icon tmcs-coding

Library of programs developed during training year of TMCS CDT (Year 1)

ymf_scripts icon ymf_scripts

A library of all the scripts used to generate animations for the YMF 2019 Presentation - "Towards more selective enhanced sampling of biomolecular dynamics"

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