tbrunetti Goto Github PK
Type: User
Twitter: tbrunettiBioCS
tbrunetti's Projects
alpine_hpc_docs
Documentation and usage of Alpine HPC in Boulder
atacseq
ATAC-seq peak-calling, QC and differential analysis pipeline
bacterial_viral_genome_and_pathway_annotation_configuration
Contains instructions and code to help generate annotation files and maps for use with alignment and read counting algorithms. Additionally, there are instuctions and code for mapping annotations to KEGG/GO mapping terms for pathway analysis
beadarrayfiles
Python library to parse file formats related to Illumina bead arrays
biobank_automated_workflow_scripts
Scripts to Automate Biobank Data Flow
bioinformatics_tools
categorical_clustering_rock
chikv_dms
Deep mutational scanning repository for Thomas (Tem) Morrison Lab
chipcertify
cnmf_fgsea_wrapper
A set of functions and a run scripts for users to run fgsea on the spectra scores output by scRNA-seq cNMF; can be modified for anything that can be preranked
consega
A simple genetic algorithm for finding consensus binding sties in DNA sequences in Drosophila
cove
Concordance Validation across Experiments
cpci_data_visualization
cpp_tutorial
coding excerises from w3schools.com
crispr-cas-data-analysis
decision_tree_classifier
demux_10xgenomics_workflows
10x 5' HTO sample multiplexing with scRNA + VDJ demultiplexing pipeline
dosageconvertor
DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3/4 to other formats such as MaCH or PLINK.
gap-pipe
Genotyping Array Processing Pipeline
genofinder
Haplo- and Diplotype Star Allele matcher for Drug Dosage Guidelines
gp3
GWAS Pre-Processing Pipeline
gtctovcf
Script to convert GTC/BPM files to VCF
gthack
Code to hack through, manipulate, and extract information from GTC files
gwas_analysis_pipeline
gwas_qa_qc_pipeline
ibd_and_ancestral_scripts
scripts written for ibd and ancestral analysis
immu6110_introduction_to_bioinformatics
CU Anschutz Course IMMU6110, introduction to bioinformatics for Department of Immunology and Microbiology
impaa
Impuatation Association Analysis
intro_matplotlib_tutorial_rmacc2017
Python Matplotlib tutorial presented at RMACC 2017
library
My list of publications and resources to read through
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