tauqeer9 Goto Github PK
Name: Tauqeer Alam
Type: User
Company: University of Illinois
Location: Urbana-Champaign
Name: Tauqeer Alam
Type: User
Company: University of Illinois
Location: Urbana-Champaign
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
A pipeline for running AMRfinderPlus and collating results into functional classes
Generates lists of core/non-core sites from a multi-FASTA alignment for ClonalFrameML
Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
📢🎯 Generic typing tool from amplicons and/or in silico PCR
♥ Efficient Estimation of Evolutionary Distances
This program performs a given ANI method (ANIb or ANIm) on a set of input files or downloads a group of files by syncronizing to ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria/ and by searching for the DOWNLOADTOKEN
A scalable bacterial genome assembly, annotation and analysis pipeline
Assembly statistic visualisation
Calculates both scaffold and contig statistics (N50, L50, etc.) from a scaffold FASTA file.
Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
Copy number pipeline for bacterial WGS
Identification of putative duplicated genes among bacterial genomes
A pipeline for performing genome-wide association tests for bacterial genomes.
bacterial assembly and basic analysis using bioconda and Snakemake
An extensive workflow to process Illumina sequencing for bacterial genomes.
Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
R package for bcbio RNA-seq analysis.
Practical, reusable scripts for bioinformatics
Collection of bioinformatics utility scripts, mostly written in Bioperl
Bioinformatics one-liners
Bioinformatics data analysis and visualization toolkit
Bioinformatics one liners from Ming Tang
One line scripts for bioinformatics
A pipeline for bioinformatics analysis of bacterial genomes
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
Gene cluster comparison figure generator
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.