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ai-for-beginners

12 Weeks, 24 Lessons, AI for All!

anndata

Annotated data.

ataqc

atom

:atom: The hackable text editor

bam2x

extract information from bam (sequence alignment) files and generate tables for further analysis.

beta_py3

BETA (Binding and Expression Target Analysis) from Cistrome

camerapi

Scripts for using my raspberry Pi as a camera.

ceasp3

CEAS Python3 version

chess.com-game-analysis

chilin

ChIP-seq DC and QC Pipeline

cistopic

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

couplenmf

cykhash

cython wrapper for khash

emacs.el

TL's Emacs elisp addons

explore_ai

Explore AI models

fermi

A WGS de novo assembler based on the FMD-index for large genomes

fermi-lite

Standalone C library for assembling Illumina short reads in small regions

galaxy

modENCODE Galaxy

generative-ai-for-beginners

12 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

genrich

Detecting sites of genomic enrichment

hmmratac

HMMRATAC peak caller for ATAC-seq data

jielib

JieLib TL fork

kmer-cnt

Code examples of fast and simple k-mer counters for tutorial purposes

lisa

epigenome analysis to rank transcription factors

macsdata

maestro

Single-cell Transcriptome and Regulome Analysis Pipeline

mpra-k562

MPRA K562 analysis source code

rails

Ruby on Rails

retriever_app

Welcome to the retrieverApp! This is an open source tool used for publication progress reporting for large collaboration networks, consortia, and individual investigators alike.

sapper

SAPPER -- call variance from ChIP-Seq directly