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2019_cornell_microbiome_hackathon

Docs and links for the 2019 Microbiome Hackathon at Cornell

anvio

An analysis and visualization platform for 'omics data

ascii2dna

what it says on the tin

atropos-multiqc

MultiQC plugin for Atropos. (beta)

authbox

bactopia

A flexible pipeline for complete analysis of bacterial genomes

birdatron_9000

Build specs for the Birdatron 9000 incubator

blv

Here you'll find the latest Duet RRF 3.#.# firmware configurations for the BLV AM8 and Cube

blv_mgn_cube-remix

An ongoing remix of BLV's legendary MGN cube 3D printer

bold_get

Code for downloading a consensus DNA sequence for a set of taxa from the BOLD repository

calour

exploratory and interactive microbiome analyses based on heatmaps

clanks-klipper-configs

Klipper config files for use with Klipper firmware

cmi-workshops

codeparty

Miscellanea from MoellerLab CodeParty

codiv-tools

A toolkit for exploring host:microbe codiversification

codiversification

culture-collector

A Snakemake workflow for characterizing and organizing microbial isolate genome sequences

deblur

Deblur is a greedy deconvolution algorithm based on known read error profiles.

decontaminate

dehumanizer

rapidly rid reads of horrid humans

dehydrator

Precision control for food dehydrators

deiner_opentrons_protocols

do-all-animals-need-microbiome_review_ant-fig

drep

Rapid comparison and dereplication of genomes

emp

Data, code and analysis results for the Earth Microbiome Project.

emp_impact

estimating impact factor for EMP studies

gapfisher

A project to use Adaptive Sampling to target metagenomic assembly gaps

heatsequer

look at the secret life of bacteria

houtz_etal_2021-nhp_microbiome

Reproducibility data and code for Houtz et al 2021, "Predictable and host-species-specific humanization of gut microbiota in captive primates"

instrain

Bioinformatics program inStrain