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Philip Mabon's Projects

bioblend icon bioblend

A python library for interacting with CloudMan and Galaxy API

dataharmonizer icon dataharmonizer

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 sampling data.

galaxy icon galaxy

Data intensive science for everyone.

gengis icon gengis

GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environment. GenGIS provides a 3D graphical interface in which the user can navigate and explore the data, as well as a Python interface that allows easy scripting of statistical analyses using the Rpy libraries.

metawrap icon metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

perlrdf icon perlrdf

Official releases of RDF::Query may be found on CPAN: http://search.cpan.org/dist/RDF-Query/

pulsar icon pulsar

Distributed job execution application built for Galaxy

spingo icon spingo

SPecies level IdentificatioN of metaGenOmic amplicons

srst2 icon srst2

Short Read Sequence Typing for Bacterial Pathogens

stringmlst icon stringmlst

Fast k-mer based tool for multi locus sequence typing (MLST)

tools-devteam icon tools-devteam

Repository encapsulating a set of Galaxy tools mostly written by the Galaxy Team.

tools-iuc icon tools-iuc

Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

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