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1000genome_snp_freq_analyis

Some scripts for 1000 genome phase3 SNP frequency analysis

140-study

Study materials for 140 group

awesome-hyper

🖥 Delightful Hyper plugins, themes, and resources

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

bam_read_counting

Count up the reads in BAM file

base_count

Counting NGS read bases

bioinfo-commonly-used-scripts

Commonly used scripts when I do bioinformatics analysis

biserver

Server settings for Bioinformatics

bitmapperbs

BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing

blacklist

Application for making ENCODE Blacklists

cas9fatemapping

Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

cloudml-samples

Samples for Google Cloud Machine Learning Engine

complete-striped-smith-waterman-library

deeplearningzerotoall

TensorFlow Basic Tutorial Labs

docker-usage-introductions

실전에서 바로 쓸 수 있는 docker 사용법

dockerfiles_examples

Example docker files

extract_umi

Extract UMI from both paired end read

fastq-resorvior

Sampling Fastq reads using resorvior sampling

gcp-for-bioinformatics

GCP Essentials for Bioinformatics Researchers

generatefastqfromfasta

Generate FASTQ read from FASTA file

git-usage

자주 사용하는 깃 명령어 모음

gliph

Grouping of Lymphocyte Interactions by Paratope Hotspots

klib

A standalone and lightweight C library

kmeans

K-means clustering algorithm in several languages

matrixmultiplication

Matrix multiplication in various languages

merge-fastq

Merge FASTQ reads

methyldackel

A (mostly) universal methylation extractor for BS-seq experiments.

methyldackel_docker

The Docker image to use MethylDackel

mgbio

Pure python modules to handle high-throughput sequencing files