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Jianhua Yang's Projects

biarkit icon biarkit

BiArkit is a versatile toolkit that integrates different modules together and helps researchers approach information on synthetic biology. The first function is GenomeBrowser, which visualizes the genomes of some model microorganisms, locates the genes on the genome and makes it easy to study the genomes. Secondly, Riboswitch and SiRNA assist the design of regulatory elements. Thirdly, we optimize the methods of scanning and output of the existing database of pathways. Fourthly, to analyze the dynamic change in various metabolic networks, we present a simulator that help the researchers analyze the network in silico. Fifthly, we have developed a tool to illustrate the genomes and their expression level under given conditions. It has been added to the Clotho. Further, to make it more convenient, the software is localized; that is to say, all functions mentioned above can be achieved without linkage to Internet.

circanno icon circanno

A tool for annotating circRNAs with known gene annotations

circscan icon circscan

Discovering the Circular RNA Interactions with RNA-binding Proteins and Ribosomes

clipsearch icon clipsearch

A tool for identifying miRNA-target interactions from CLIP-seq peaks

endseeker icon endseeker

A computational software to calculate the 3’-end coverage of the candidate Nm sites and identify novel Nm sites from high-throughput sequencing data.

kturnseeker icon kturnseeker

A computational software for identifying forward Kink-turn RNAs (fktRNAs) and backward Kink-turn RNAs (bktRNAs) from fasta file.

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