build directory and python setup about simpleelastix HOT 12 CLOSED

I've solved this problem, your Python path mush be '/usr/bin', instead of the anaconda one.

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Dear kaspermarstal
When I run “python setup.py install” command in the {BUILD_DIRECTORY}/SimpleITK-build/Wrapping/Python/Packaging path, the following error occurs:
error: can’t copy ‘F:\Development\build\SimpleElastix\SimpleITK-build\Wrapping\Python\Packaging\ _simpleitk.pyd’ : does not exist or not a regular file
I would be thankful if you help me in this way

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I didn't find the setup.py either. To be more specific, there's no such directory called PythonPackage.
I tried the setupegg.py of Wrapping/Python/Packaging/setupegg.py, but it didn't work.

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In the build directory:

kyobi@mischief:~/code$ find build/ -type f -name "*setup*" -print
build/Swig-prefix/src/Swig/Tools/setup.py.tmpl
build/Swig-prefix/src/Swig/Examples/chicken/egg/single.setup
build/Swig-prefix/src/Swig/Examples/chicken/egg/multi.setup

In the SimpleElastix directory:

kyobi@mischief:~/code$ find SimpleElastix -type f -name "*setup*" -print
SimpleElastix/Wrapping/PythonPackage/setuptools-2.2.tar.gz
SimpleElastix/Wrapping/PythonPackage/ez_setup.py
SimpleElastix/Wrapping/PythonPackage/setup.py.in
SimpleElastix/Wrapping/PythonPackage/setupegg.py

At this point I am not clear on how to actually install the python module successfully. Running the ez_setup.py script:

sudo python ez_setup.py install

but this itself does not let me import the module, is there some system path variable I am neglecting?

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You should have a setup.py file in build/SimpleITK-build/Wrapping/PythonPackage directory. This should then be run like sudo python setup.py install.

Can you point out where there is confusion about the build directories? It should be the top-level build directory when using the SuperBuild and needs to be fixed :) thanks for the heads up

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The confusion may stem from that fact that the Python directory will be in buildir/SimpleITK-build/Wrapping/PythonPackage directory when using the superbuild, and buildir/Wrapping/PythonPackage when not using the superbuild.

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I found setup.py in SimpleITK-build/Wrapping/Python/Packaging
Running this seemed to work, at least I can see Elastix & SimpleElastix in dir(SimpleITK). This was fresh clone, commit: 7e30260

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I just met the same problem as @stephenholtz,

There is only Java, Lua and Tcl , I cannot find PythonPackage .

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I'm having the same issue as @snapfinger

In the build > SimpleITK folder I only see CMakeCacheInit.txt. In SimpleElastix > Wrapping > Python > Packaging I have the following: init.py, setup.py.in and setupegg.py. I have attached the cache file if it is of use.
CMakeCacheInit.txt

Using macOS and have tried using both the native python and anaconda installations.

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@a-r-j It looks like CMake is not picking up your Python installation, otherwise it is usually build by default. There isn't any Python variables in your CMakeCacheInit.txt either. Is WRAP_Python set to ON or OFF after cmake is initialized?

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I've solved this problem, your Python path mush be '/usr/bin', instead of the anaconda one.

Hello, I meet the same problem, could tell me how do you solve this problem? thanks.

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I am having the same issue. Does Python with Anaconda work? or having linux filesystem is a dependency?

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