sunxingqiang Goto Github PK

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

blog

blog

clusterprofiler

statistical analysis and visulization of functional profiles for genes and gene clusters

course_embo_at_tgac_ppi_sep2015

Program and some material for EMBO Practical Course on computational analysis of protein-protein interactions: From sequences to networks, taking place at TGAC, Norwich, UK, Sep-Oct 2015

crun

Run workflow mixed with concurrent and sequential jobs

csvtk

Another cross-platform, efficient, practical and pretty CSV/TSV toolkit in Golang

datasciencecoursera

Data scientist's Toolkit

datasharing

The Leek group guide to data sharing

docs.hpc.sjtu.edu.cn

SJTU HPC 用户文档站点

easy_qsub

Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.

example

try and have fun

galaxy

Data intensive science for everyone.

gtz

A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.

kallisto

Near-optimal RNA-Seq quantification

music2

identifying mutational significance in cancer genomes

my_perl

perl

parse-kegg

Script to format KEGG pathway data for PathScan

perl

perl

programmingprojectlist

python

Python

qiime16stutorial

A tutorial on up-to-date methods of 16S analysis with QIIME

r-ninja

R语言忍者秘笈

r_seq

R scripts for NGS data analysis

ramigo

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/RamiGO.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=RamiGO.

rdnatools

A series of tools and pipelines for working with 16S sequence generated with the PacBio(R) SMRT sequencing

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

sun010848.github.io

My blog

test

just for test

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly