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Name: Center for Statistical Genetics
Type: Organization
Bio: The Center for Statistical Genetics at the University of Michigan School of Public Health
Location: Ann Arbor, MI
Name: Center for Statistical Genetics
Type: Organization
Bio: The Center for Statistical Genetics at the University of Michigan School of Public Health
Location: Ann Arbor, MI
Dependencies ------------ On debian type systems (including Ubuntu), add the following packages if they are not already installed (or have your admin add them if you do not have permission): sudo apt-get install g++ libssl-dev libcurses-perl zlib1g-dev Building -------- To compile, from the top level directory, type: make To test (after compiling), from the top level directory, type: make test Under the main statgen repository, there are: * lib - the library code ** The library code is compiled into libStatGen.a which, after compiling is located at: statgen/lib/libStatGen.a ** After compiling, library headers can all be found in: statgen/lib/include * src - the tools we developed ** After compling, the executables are found in: statgen/src/bin * scripts - the scripts we developed Makefiles --------- statgen/Makefile.include should contain the definitions that you need for creating software using this library. statgen/lib/Makefile.lib and statgen/lib/Makefile.src can be used as templates for creating Makefiles for new software. If possible, just link to them. They look for a file called Makefile.tool that should be all you need to update for your specific software. (both Makefiles automatically include Makefile.include) A similar setup should be used for test code, linking your Makefile to statgen/Makefile.test and defining Makefile.testtool for your specific test. Other Notes ----------- * Typically the .o files are compiled into their own directory called obj.
Javascript modules for 2D and 3D Interactive Visualization (23IV) using WebGL.
Anisble deployment roles and playbook for BRAVO API and UI
Deployment of data and tooling to run BRAVO data prep on a GCP slurm.
Deprecated. See new version: https://github.com/statgen/bravo_api - BRowse All Variants Online
Provisioning and deployment of example BRAVO vignette.
(DEPRECATED) Data preparation pipeline for BRAVO. See https://github.com/statgen/bravo_data_prep
Server side data processing and retrieval endpoints for BRAVO
Work flows and tools to create data that backs the BRAVO API.
Front end to navigate and visualize results from BRAVO API
BRAVO's Vue JS based UI.
Script for aligning on dynamically provisioned VM's.
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
A set of tools for accessing and manipulating CRAM files
Instructions for setting up python3
Very early draft of a CSG python package.
Genetic multiplexing of barcoded single cell RNA-seq
A tool for converting diploid geontypes to haploid.
Python library for text-based GUI
Dockerfile for Alignment
Docker Image for SAIGE
tools to efficiently retrieve and calculate LD
Encore Analysis Server
An R package to interact with the Encore analysis server
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Open source projects and samples from Microsoft.
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Data-Driven Documents codes.
China tencent open source team.