Comments (3)
adw96
commented on August 27, 2024
1
Since they love the taxonomy/phylogeny trays so much, you might want to consider plotting it as labels on the taxonomy. Therefore, if there are related groups that consistently have changes in abundance, you can see that visually.
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jvhagey
commented on August 27, 2024
Hi Amy and Bryan,
Super excited to see plots are already in the works for this! I was looking to plot of the results of the differentialTest() function. In the mean time while graphing functions aren't ready for the differentialTest() output, to get an idea of the direction of the differences in abundance between groups can I just graph the taxa from list of differential abundance taxa using the raw count data from the otu_table() from the original phyloseq object? Not sure if there were transformed/normalized abundances that were being used within corncob that would be more appropriate for graph. Thanks for the feedback!
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bryandmartin
commented on August 27, 2024
Fixed in ff3e86d
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Related Issues (20)
- All models failed to converge! with vignette data HOT 6
- differentialTest Error (All models failed to converge) HOT 4
- plot options HOT 3
- Output models despite unable to converge HOT 3
- request for vignette for continuous covariate HOT 5
- plot options- dotplot HOT 3
- Model failing to converge -- small sample size HOT 4
- Requesting help for modeling a design with longitudinal data HOT 3
- rename master -> main HOT 2
- Option for non-count estimator (estimating equations interpretation) HOT 5
- volcano plot HOT 1
- score testing and robust score testing... HOT 2
- Get! Corncob! back! on! CRAN! (Also, installation workaround code) HOT 25
- `aes_string()` was deprecated in ggplot2 3.0.0. HOT 4
- `contrastsTest` returns NULL for all return values HOT 2
- github.io site HOT 3
- Trying to determine significance with differentialTest when one group has no counts of an ASV and the other group is dominated by it HOT 1
- glance_significant_models Error HOT 3
- [Question] Robust SEs for longitudinal/repeated measures designs? HOT 2
- Issue with bbml HOT 15
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