Comments (3)
Are you able to run any other toolkit workflow on that HPC with the same SLURM scheduler and a similar sbatch script?
from staphb_toolkit.
I am able to run the Tredegar workflow on this HPC using both default containers and local containers specified in the config file; however, I do reach an error on the results process (fails to access tredegar_results/logs/Tredegar_trace.txt). I do not encounter the same error at the beginning of the workflow like I do with monroe.
from staphb_toolkit.
Workflows have been migrated out of the toolkit and will have their own repositories going forward.
from staphb_toolkit.
Related Issues (20)
- using python setup.py install breaks package manifest
- Cutshaw Spades Memory HOT 1
- ivar not trimming primers in Monroe pipeline HOT 1
- Possible report generation hang HOT 13
- Installation error HOT 1
- Allow demultipled reads in dirs not named "barcode*" for the monroe ont_assembly workflow HOT 1
- Dryad Median and Average Coverage Calculator
- Monroe results "crash" bc pangolin output columns changed HOT 3
- Dryad AR report gene coverage and identity appear to be swapped HOT 2
- Are there plans to move workflows into their own repos? HOT 10
- Container downloads HOT 1
- monroe workflows are not compatible with Pangolin 3.0+ HOT 3
- Cecret need to update the default nextclade containers HOT 2
- Error when running Dryad pipeline HOT 2
- Error when running 'Cecret' for single reads
- Changing to ArticV4 Primer Scheme HOT 4
- Erroe while runing the Cecret workflow HOT 7
- How to run toolkit without internet access HOT 1
- No input files were found! HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from staphb_toolkit.