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Susana Posada Céspedes's Projects

ampliconclipper icon ampliconclipper

AmpliconClipper is an alignment postprocessor that removes PCR primers from SAM alignments and discards reads with major errors.

gtfparse icon gtfparse

Parsing tools for GTF (gene transfer format) files

mc-cbn icon mc-cbn

MC-CBN performs large-scale inference on conjunctive Bayesian networks

modseq icon modseq

Pipeline for the analysis of synthetic combinatorial libraries

shorah icon shorah

Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)

smallgenomeutilities icon smallgenomeutilities

SmallGenomeUtilities is a collection of Python scripts to convert alignments between different reference genomes.

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

v-pipe icon v-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

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