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advent-of-code-2016

My Python3 solutions to http://adventofcode.com/2016

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

autoadapt

Automatic quality control for FASTQ sequencing files

biopython

Official git repository for Biopython (converted from CVS)

chkbit-py

Checks the data integrity of your files across backups!

circlator

A tool to circularize genome assemblies

clusterscluster

Look for similar secondary metabolite biosynthetic gene clusters in a set of microbial genomes.

cotrasif

daligner

Find all significant local alignments between reads

docker-mailserver

A fullstack but simple mailserver (smtp, imap, antispam, antivirus, ssl...) using Docker.

dockerpi

A Virtualised Raspberry Pi inside a Docker image

funannotate

Eukaryotic Genome Annotation Pipeline

hinge

Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"

hug

Embrace the APIs of the future. Hug aims to make developing APIs as simple as possible, but no simpler.

prokka

Rapid prokaryotic genome annotation

pyahocorasick

Python module (C extension and plain python) implementing Aho-Corasick algorithm

pyfilefixity

📂🛡️Suite of tools for file fixity (data protection for long term storage⌛) using redundant error correcting codes, hash auditing and duplications with majority vote, all in pure Python🐍

pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

rpackages

R package development - the Leek group way!

track

personal computer usage tracker