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rsharris avatar rsharris commented on August 20, 2024

I'm not one of the developers, but UINT64_MAX is part of standard C++. It should be defined in cstdint.

I had no trouble building without root permission. I did the following without problems:

cd /some/path/to/squeakr/
make squeakr-count NH=1
make squeakr-query NH=1
make squeakr-inner-prod NH=1
export DYLD_LIBRARY_PATH=/some/other/path/to/lib
./squeakr-count 0 20 1 test.fastq

I did make some minor mods to the code and to the Makefile (as mentioned in issue #14), but I don't think those are relevant to your problem.

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rtjohnso avatar rtjohnso commented on August 20, 2024

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chelseaju avatar chelseaju commented on August 20, 2024

Yes, adding the NH=1 tag solves the issue for me! Thank you all!!

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