spakowiczlab Goto Github PK

aacrmv20

Intratumoral microbes correlate with tumor-infiltrating lymphocytes in lung cancer RNAseq

atbac

clinical-trial-end-date

Script for predicting the completion date of clinical trials

co-med-io

co-mo-io

The effect of co-morbidities on immunotherapy response.

decoasthma

Code to reproduce the analyses described in the manuscript, "Approaches for integrating heterogeneous RNA-seq data reveals cross-talk between microbes and genes in asthmatic patients"

diacomp20

Code to support the study of diabetic complications using preclinical models

exohnsc

Code related to the study of the tumor microbiome and head and neck cancer

exorien-melio

exorien-recrad

Code for processing and analyses associated with the recrad project

exotic

Make functions utilized in the exotic pipeline available through package format

exotic-manuscript

code related to data processing and analysis for exotic manuscript

fitness

analysis related to the FITNESS Study at OSU

lab-logistics

Coding and structure conventions in the lab

mageio

Microbiome, Aging and Immunotherapy

mhealth-iit

R Shiny app to support the use of mobile health data in academic clinical trials. This tool enables one to obtain consent to share user's FitBit data with the research team.

microsig

This package contains functions to calculate microbe signatures, particularly from bugsigdb inputs.

mimic

modbio

Power, data processing and analyses related to the "modbio" companion to the INSIGNA clinical trial

mt.surv

R package for a multi-threshold survival area analysis

nktcan

Analyses and calculations related to the study of NKTcells in cancer

nlr-io

Analysis associated with the publication, "Change in neutrophil to lymphocyte ratio during immunotherapy treatment is a non-linear predictor of patient outcomes in advanced cancers" DOI : 10.1007/s00432-019-02982-4

scf

seqmethods

Spakowicz lab methods for sequencing microbiome & other samples

tmesig

Tumor Microenvironment expression signatures

useful-numbers