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Seongmin Choi's Projects

battenberg icon battenberg

Battenberg R package for subclonal copynumber estimation

bin icon bin

Small tools to keep for a better quality of life

cdm_search icon cdm_search

Search code ID and names for CDM mapping tables

dmls-book icon dmls-book

Summaries and resources for Designing Machine Learning Systems book (Chip Huyen, O'Reilly 2022)

dryclean icon dryclean

Irons out wrinkles in noisy coverage data using robust PCA

fuc icon fuc

Frequently used commands in bioinformatics

fusionseeker icon fusionseeker

A gene fusion caller for long-read transcriptome sequencing data.

genevector icon genevector

Vector representations of gene co-expression in single cell RNAseq.

gseapy icon gseapy

Gene Set Enrichment Analysis in Python

hapcut2 icon hapcut2

software tools for haplotype assembly from sequence data

mutationtimer_pipeline icon mutationtimer_pipeline

Pipeline for feeding Isabl data into MutationTimeR (https://github.com/gerstung-lab/MutationTimeR)

nanoseq icon nanoseq

Nanopore demultiplexing, QC and alignment pipeline

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