soymintc Goto Github PK

battenberg

Battenberg R package for subclonal copynumber estimation

bin

Small tools to keep for a better quality of life

biscut-py3

biv_spatial_corr

Script for testing and implementing Lee S (2001)

blacklist

Application for making ENCODE Blacklists

brain_tumor_segmentation_web_service

Brain tumor segmentation web service to predict the segmentation of 3D brain MRI images.

cbi_home

Homepage for SNUH CBI

cdm_search

Search code ID and names for CDM mapping tables

classifycopynumber

Classify Copy Number Amplifications and Deletions

dlbcl-pipeline-qc

DLBCL breakpoint pipeline QC

dmls-book

Summaries and resources for Designing Machine Learning Systems book (Chip Huyen, O'Reilly 2022)

docker-galaxy-stable

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.

dryclean

Irons out wrinkles in noisy coverage data using robust PCA

dvartk

Variant comparison tool-kit

fng-sentiment-slack-alarm

A sentiment alarm on slack for crypto feer and greed index

fuc

Frequently used commands in bioinformatics

fusionseeker

A gene fusion caller for long-read transcriptome sequencing data.

generate_mafs

Generate Variant Tables from Isabl Results

genevector

Vector representations of gene co-expression in single cell RNAseq.

gseapy

Gene Set Enrichment Analysis in Python

hapcut2

software tools for haplotype assembly from sequence data

igv-snapshot-automator

Script to automatically create and run IGV snapshot batchscripts

juno-nextflow-template

Basic setup for running nextflow on juno

keras-contrib

Keras community contributions

lohhla

lyrics-sat

Lyris with syllable-aware translations

msk-docs-sm

Temporary documentations

mutationtimer_pipeline

Pipeline for feeding Isabl data into MutationTimeR (https://github.com/gerstung-lab/MutationTimeR)

my_rc_files

my bashrc, screenrc, vimrc files

nanoseq

Nanopore demultiplexing, QC and alignment pipeline