sourmash-bio Goto Github PK
Name: sourmash, for large-scale biological sequence search!
Type: Organization
Bio: Quickly search, compare, and analyze genomic and metagenomic data sets.
Blog: https://sourmash.bio
Name: sourmash, for large-scale biological sequence search!
Type: Organization
Bio: Quickly search, compare, and analyze genomic and metagenomic data sets.
Blog: https://sourmash.bio
Tools and utilities for making use of mastiff
Validation and testing for sourmash branchwater
Some simple benchmarking code for sourmash_plugin_branchwater
sourmash in biobox format
Searching large collections of sequencing data with genome-scale queries
Code and workflows for large-scale genomic search of e.g. the Sequence Read Archive
build NCBI lineages file for sourmash taxonomy
Example workflows and useful scripts for building your own sourmash databases
Build infrastructure for official sourmash database releases
Build sourmash databases for genbank.
Brute-force multithreading clustering of sourmash sigs
Quickly search, compare, and analyze genomic and metagenomic data sets.
Example commands for doing sequence analysis with sourmash
A meta-package to install a number of sourmash plugins!
sourmash recipes
A sourmash plugin to read and write sketches using Apache Avro.
Improved plotting/viz and cluster examination for sourmash
fast, multithreaded sourmash operations: search, compare, and gather.
An improved `search --containment` for sourmash
sourmash plugin to load files from URLs with fsspec.
kmers extraction based on weighted-random-sampling
Sketch many files at once
template for building sourmash plugins
venn diagrams for sourmash sketches!
Python utilities for sourmash plugins and scripts
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