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Name: vcan-clinic
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Company: vcan-clinic
Name: vcan-clinic
Type: User
Company: vcan-clinic
Hidden Markov model (HMM) for predicting somatic loss of heterozygosity and allelic imbalance in whole tumour genome sequencing data.
a lightweight bam file depth statistical tool
tools for adding mutations to existing .bam files, used for testing mutation callers
BreakID: genomics breakpoints identification to detect gene fusion events using discordant pairs and split read
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.
Characterization of Germline variants
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
An R client for broads firehose pipeline, providing TCGA data sets
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Gene fusion detection and visualization
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).
xHLA: Fast and accurate HLA typing from short read sequence data
3D hotspot mutation proximity analysis tool
C library for high-throughput sequencing data formats
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
lumpy: a general probabilistic framework for structural variant discovery
MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.
microsatellite instability detection using paired tumor-normal
A needle plot for mutation data
Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
Programs to analyse NGS data for population genetics purposes
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School
RTG Tools: Utilities for accurate VCF comparison and manipulation
Tools (written in C using htslib) for manipulating next-generation sequencing data
Toolkit for processing sequences in FASTA/Q formats
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.